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International Journal of Bifurcation and Chaos
Article . 2010 . Peer-reviewed
Data sources: Crossref
https://dx.doi.org/10.48550/ar...
Article . 2009
License: arXiv Non-Exclusive Distribution
Data sources: Datacite
DBLP
Article . 2020
Data sources: DBLP
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ROBUSTNESS OF TRANSCRIPTIONAL REGULATION IN YEAST-LIKE MODEL BOOLEAN NETWORKS

Authors: Murat Tugrul; Alkan Kabakçioglu;

ROBUSTNESS OF TRANSCRIPTIONAL REGULATION IN YEAST-LIKE MODEL BOOLEAN NETWORKS

Abstract

We investigate the dynamical properties of the transcriptional regulation of gene expression in the yeast Saccharomyces Cerevisiae within the framework of a synchronously and deterministically updated Boolean network model. With a dynamically determinant subnetwork, we explore the robustness of transcriptional regulation as a function of the type of Boolean functions used in the model that mimic the influence of regulating agents on the transcription level of a gene. We compare the results obtained for the actual yeast network with those from two different model networks, one with similar in-degree distribution as the yeast and otherwise random, and another due to Balcan et al., where the global topology of the yeast network is reproduced faithfully. We, surprisingly, find that the first set of model networks better reproduce the results found with the actual yeast network, even though the Balcan et al. model networks are structurally more similar to that of yeast.

Keywords

Molecular Networks (q-bio.MN), FOS: Biological sciences, Quantitative Biology - Molecular Networks

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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