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At-admission prediction of mortality and pulmonary embolism in an international cohort of hospitalised patients with COVID-19 using statistical and machine learning methods

Authors: Mesinovic, Munib; Wong, Xin Ci; Rajahram, Giri Shan; Citarella, Barbara Wanjiru; Peariasamy, Kalaiarasu M.; van Someren Greve, Frank; Olliaro, Piero; +193 Authors

At-admission prediction of mortality and pulmonary embolism in an international cohort of hospitalised patients with COVID-19 using statistical and machine learning methods

Abstract

AbstractBy September 2022, more than 600 million cases of SARS-CoV-2 infection have been reported globally, resulting in over 6.5 million deaths. COVID-19 mortality risk estimators are often, however, developed with small unrepresentative samples and with methodological limitations. It is highly important to develop predictive tools for pulmonary embolism (PE) in COVID-19 patients as one of the most severe preventable complications of COVID-19. Early recognition can help provide life-saving targeted anti-coagulation therapy right at admission. Using a dataset of more than 800,000 COVID-19 patients from an international cohort, we propose a cost-sensitive gradient-boosted machine learning model that predicts occurrence of PE and death at admission. Logistic regression, Cox proportional hazards models, and Shapley values were used to identify key predictors for PE and death. Our prediction model had a test AUROC of 75.9% and 74.2%, and sensitivities of 67.5% and 72.7% for PE and all-cause mortality respectively on a highly diverse and held-out test set. The PE prediction model was also evaluated on patients in UK and Spain separately with test results of 74.5% AUROC, 63.5% sensitivity and 78.9% AUROC, 95.7% sensitivity. Age, sex, region of admission, comorbidities (chronic cardiac and pulmonary disease, dementia, diabetes, hypertension, cancer, obesity, smoking), and symptoms (any, confusion, chest pain, fatigue, headache, fever, muscle or joint pain, shortness of breath) were the most important clinical predictors at admission. Age, overall presence of symptoms, shortness of breath, and hypertension were found to be key predictors for PE using our extreme gradient boosted model. This analysis based on the, until now, largest global dataset for this set of problems can inform hospital prioritisation policy and guide long term clinical research and decision-making for COVID-19 patients globally. Our machine learning model developed from an international cohort can serve to better regulate hospital risk prioritisation of at-risk patients.

Countries
Italy, Colombia, Italy, Netherlands, Denmark, Italy, United Kingdom, Netherlands, United Kingdom, Italy, Italy, Netherlands, Italy, France, Italy, Poland, Spain, United States
Keywords

Male, Adult, Respiratory diseases, Biomedical and clinical sciences, Epidemiology, [SDV]Life Sciences [q-bio], Science, 610, Article, Machine Learning, Cohort Studies, SDG 3 - Good Health and Well-being, Risk Factors, 80 and over, Humans, Adult; Aged; Aged, 80 and over; Cohort Studies; COVID-19; Female; Hospitalization; Humans; Machine Learning; Male; Middle Aged; Pulmonary Embolism; Risk Factors; SARS-CoV-2; Spain; United Kingdom, Pulmonary Embolism/mortality, Aged, Aged, 80 and over, COVID-19/mortality, [SDV.MHEP] Life Sciences [q-bio]/Human health and pathology, Coronavirus disease 2019, United Kingdom/epidemiology, SARS-CoV-2, SARS-CoV-2/isolation & purification, Q, R, COVID-19, Middle Aged, United Kingdom, Hospitalization, Risk factors, Spain, Spain/epidemiology, Medicine, Infectious diseases, Female, Cohort analysis, Pulmonary Embolism, Complication, Biomedical engineering, [SDV.MHEP]Life Sciences [q-bio]/Human health and pathology

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
8
Top 10%
Average
Top 10%
Green
hybrid