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doi: 10.1002/ijc.34278
pmid: 36082445
pmc: PMC9828677
handle: 10481/85107 , 10261/346947 , 10668/22106 , 20.500.12530/96329 , 11568/1157424
doi: 10.1002/ijc.34278
pmid: 36082445
pmc: PMC9828677
handle: 10481/85107 , 10261/346947 , 10668/22106 , 20.500.12530/96329 , 11568/1157424
AbstractPleiotropy, which consists of a single gene or allelic variant affecting multiple unrelated traits, is common across cancers, with evidence for genome‐wide significant loci shared across cancer and noncancer traits. This feature is particularly relevant in multiple myeloma (MM) because several susceptibility loci that have been identified to date are pleiotropic. Therefore, the aim of this study was to identify novel pleiotropic variants involved in MM risk using 28 684 independent single nucleotide polymorphisms (SNPs) from GWAS Catalog that reached a significant association (P < 5 × 10−8) with their respective trait. The selected SNPs were analyzed in 2434 MM cases and 3446 controls from the International Lymphoma Epidemiology Consortium (InterLymph). The 10 SNPs showing the strongest associations with MM risk in InterLymph were selected for replication in an independent set of 1955 MM cases and 1549 controls from the International Multiple Myeloma rESEarch (IMMEnSE) consortium and 418 MM cases and 147 282 controls from the FinnGen project. The combined analysis of the three studies identified an association between DNAJB4‐rs34517439‐A and an increased risk of developing MM (OR = 1.22, 95%CI 1.13‐1.32, P = 4.81 × 10−7). rs34517439‐A is associated with a modified expression of the FUBP1 gene, which encodes a multifunctional DNA and RNA‐binding protein that it was observed to influence the regulation of various genes involved in cell cycle regulation, among which various oncogenes and oncosuppressors. In conclusion, with a pleiotropic scan approach we identified DNAJB4‐rs34517439 as a potentially novel MM risk locus.
Medical Sciences, Bioinformatics, 610, Polymorphism, Single Nucleotide, pleiotropy scan, Biomedical Informatics, Cancer Genetics and Epigenetics, Multiple myeloma, pleiotropy, Medical Specialties, Medicine and Health Sciences, Genetic susceptibility, Humans, Genetic Predisposition to Disease, Polymorphism, Alleles, Pleiotropy, genetic susceptibility; multiple myeloma; pleiotropy; pleiotropy scan; polymorphisms; Humans; Oncogenes; Alleles; Phenotype; Polymorphism, Single Nucleotide; Genome-Wide Association Study; Genetic Predisposition to Disease; HSP40 Heat-Shock Proteins; DNA-Binding Proteins; RNA-Binding Proteins; Multiple Myeloma, RNA-Binding Proteins, Single Nucleotide, Oncogenes, HSP40 Heat-Shock Proteins, multiple myeloma, DNA-Binding Proteins, Phenotype, Oncology, Pleiotropy scan, HSP40 Heat-Shock Proteins/genetics, Multiple Myeloma/epidemiology, polymorphisms, Polymorphisms, Multiple Myeloma, DNA-Binding Proteins/genetics, genetic susceptibility, Genome-Wide Association Study
Medical Sciences, Bioinformatics, 610, Polymorphism, Single Nucleotide, pleiotropy scan, Biomedical Informatics, Cancer Genetics and Epigenetics, Multiple myeloma, pleiotropy, Medical Specialties, Medicine and Health Sciences, Genetic susceptibility, Humans, Genetic Predisposition to Disease, Polymorphism, Alleles, Pleiotropy, genetic susceptibility; multiple myeloma; pleiotropy; pleiotropy scan; polymorphisms; Humans; Oncogenes; Alleles; Phenotype; Polymorphism, Single Nucleotide; Genome-Wide Association Study; Genetic Predisposition to Disease; HSP40 Heat-Shock Proteins; DNA-Binding Proteins; RNA-Binding Proteins; Multiple Myeloma, RNA-Binding Proteins, Single Nucleotide, Oncogenes, HSP40 Heat-Shock Proteins, multiple myeloma, DNA-Binding Proteins, Phenotype, Oncology, Pleiotropy scan, HSP40 Heat-Shock Proteins/genetics, Multiple Myeloma/epidemiology, polymorphisms, Polymorphisms, Multiple Myeloma, DNA-Binding Proteins/genetics, genetic susceptibility, Genome-Wide Association Study
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