Quantification of discard per unit effort rates (DPUE) has been proposed by the European Commission as a measure to manage the discarding of commercially fished organisms. In the Spanish fresh trawling fleet operating in North West Africa, both target species of black hakes, Merluccius polli and Merluccius senegalensis are data limited stocks (DLS). Hence, discards of these fleets are even more unknown but not unimportant part of the total catch (retained and discarded). Onboard observer data from commercial surveys from 2016 to 2018 provide a detailed source of scientific information about catches, discards, effort and technical factors in this fleet. This is the first quantitative analysis to model DPUE through generalised linear mixed models (GLMM), based on the explicit distinction between abundance and technical factors coming from information of observer surveys. We describe the relationship between discards and environment, catches of target and other species, effort of the fleet, spatial and temporal variation in discard accessibility, vessel characteristics, strategy of the skippers and market decisions. Unlike hake catches, discards were higher and more dispersed in shallower than in deeper waters. We identified two separate métiers for the Spanish fresh trawling fleet determined by depth and treated total discards as a stock unit susceptible of being monitored, managed and assessed. The strategy of the skipper appears to have a more important effect on discards than vessel characteristics. This study shows the importance of observer data for this fishery and identifies recommendations for the improvement in the scientific usefulness of logbook information.