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Frontiers in Molecular Biosciences
Article . 2022 . Peer-reviewed
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PubMed Central
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eIF4G1 N-terminal intrinsically disordered domain is a multi-docking station for RNA, Pab1, Pub1, and self-assembly

Authors: Chaves-Arquero, Belén; Martínez-Lumbreras, Santiago; Sibille, Nathalie; Camero, Sergio; Bernadó, Pau; Jiménez, Ma Ángeles; Zorrilla, Silvia; +1 Authors

eIF4G1 N-terminal intrinsically disordered domain is a multi-docking station for RNA, Pab1, Pub1, and self-assembly

Abstract

Yeast eIF4G1 interacts with RNA binding proteins (RBPs) like Pab1 and Pub1 affecting its function in translation initiation and stress granules formation. We present an NMR and SAXS study of the N-terminal intrinsically disordered region of eIF4G1 (residues 1–249) and its interactions with Pub1, Pab1 and RNA. The conformational ensemble of eIF4G11-249 shows an α-helix within the BOX3 conserved element and a dynamic network of fuzzy π-π and π-cation interactions involving arginine and aromatic residues. The Pab1 RRM2 domain interacts with eIF4G1 BOX3, the canonical interaction site, but also with BOX2, a conserved element of unknown function to date. The RNA1 region interacts with RNA through a new RNA interaction motif and with the Pub1 RRM3 domain. This later also interacts with eIF4G1 BOX1 modulating its intrinsic self-assembly properties. The description of the biomolecular interactions involving eIF4G1 to the residue detail increases our knowledge about biological processes involving this key translation initiation factor.

Countries
Germany, France, Spain
Keywords

Protein Folding, 570, QH301-705.5, Pub1, biomolecular condensation, intrinsically disordered proteins (IDP), Intrinsically disordered proteins (IDP), eIF4G1, Stress granule (SG), Molecular Biosciences, Biology (General), structural ensemble, Pab1, EIF4G1, info:eu-repo/classification/ddc/570, SAXS (small-angle X-ray scattering), Paramagnetic relaxation enhancement (PRE), RNA binding protein, NMR, [SDV] Life Sciences [q-bio], Structural ensemble, ddc:570, Misfolding and Degradation Intrinsically disordered proteins (IDP)

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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