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International Journal of Molecular Sciences
Article . 2022 . Peer-reviewed
License: CC BY
Data sources: Crossref
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Article . 2022
License: CC BY
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Biblos-e Archivo
Article . 2022
Data sources: Biblos-e Archivo
https://doi.org/10.1101/2021.1...
Article . 2021 . Peer-reviewed
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RNA-seq, bioinformatic identification of potential MicroRNA-Like Small RNAs in the edible mushroom Agaricus bisporus and experimental approach for their validation

Authors: Francisco R. Marin; Alberto Dávalos; Dylan Kiltschewskij; Maria C. Crespo; Murray Cairns; Eduardo Andrés-León; Cristina Soler-Rivas;

RNA-seq, bioinformatic identification of potential MicroRNA-Like Small RNAs in the edible mushroom Agaricus bisporus and experimental approach for their validation

Abstract

ABSTRACT Although genomes from many edible mushrooms are sequenced, studies on fungal miRNAs are scarce. Most of the bioinformatic tools are designed for plants or animals but fungal miRNAs processing and expression share similarities and differences with both kingdoms. Moreover, since mushroom species such as Agaricus bisporus (white button mushroom) are frequently consumed as food, controversial discussions are still evaluating whether their miRNAs might or might not be assimilated, perhaps within extracellular vesicles (i.e exosomes). Therefore, the A. bisporus RNA-seq was studied in order to identify potential de novo miRNA-like small RNAs (milRNAs) that might allow their later detection in the diet. Results pointed to 1 already known and 37 de novo milRNAss. Three milRNAss were selected for RT-qPCR experiments. Precursors and mature milRNAs were found in the edible parts (caps and stipes) validating the predictions carried out in silico . When their potential gene targets were investigated, results pointed that mostly were involved in primary and secondary metabolic regulation. However, when human transcriptome is used as target, the results suggest that they might interfere with important biological processes related with cancer, infectious process and neurodegenerative diseases.

Countries
Spain, Australia
Keywords

miRNAs; milRNAs; fungi; <i>Agaricus bisporus</i>; white button mushroom; RT-qPCR, White button mushroom, Agaricus, RNA, fungal, RT-qPCR, Sustainable Development Goals, white button mushroom, Fungi, 500, Computational Biology, RNA, Fungal, Química, Agaricus bisporus, milRNAs, Article, Computational biology, MicroRNAs, miRNAs, fungi, RNA-Seq, SDG 3

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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