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The BRAHMA (BRM) gene encodes the SNF2-type ATPase of the putative Arabidopsis thaliana SWI/SNF chromatin remodelling complex. This family of ATPases is characterized by the presence of a conserved catalytic domain and an arrangement of auxiliary domains, whose functions in the remodelling activity remains unclear. Here, we characterize, at the molecular and functional level, the carboxy-terminal part of Arabidopsis BRM. We have found three DNA-binding regions that bind various free DNA and nucleosomal probes with different specificity. One of these regions contains an AT-hook motif. The carboxy terminus also contains a bromodomain able to bind histones H3 and H4. We propose that this array of domains constitute a nucleosome interaction module that helps BRM to interact with its substrate. We also characterize an Arabidopsis mutant that expresses a BRM protein lacking the last 454 amino acid residues (BRM-DeltaC), encompassing the bromodomain and two of the three DNA-binding activities identified. This mutant displays an intermediate phenotype between those of the wild-type and a null allele mutant, suggesting that the nucleosome interaction module is required for the normal function of BRM but it is not essential for the remodelling activity of BRM-containing SWI/SNF complexes.
Adenosine Triphosphatases, DNA, Bacterial, Binding Sites, DNA, Plant, Arabidopsis Proteins, Recombinant Fusion Proteins, Molecular Sequence Data, Arabidopsis, Bromodomain, Flowers, Genes, Plant, Chromatin, Nucleosomes, Protein Structure, Tertiary, Histones, Mutation, swi/snf complex, Seed development, Amino Acid Sequence, AT-hook, Sequence Alignment
Adenosine Triphosphatases, DNA, Bacterial, Binding Sites, DNA, Plant, Arabidopsis Proteins, Recombinant Fusion Proteins, Molecular Sequence Data, Arabidopsis, Bromodomain, Flowers, Genes, Plant, Chromatin, Nucleosomes, Protein Structure, Tertiary, Histones, Mutation, swi/snf complex, Seed development, Amino Acid Sequence, AT-hook, Sequence Alignment
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