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The Plant Journal
Article . 2012 . Peer-reviewed
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Article . 2012
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Genome‐wide binding‐site analysis of REVOLUTA reveals a link between leaf patterning and light‐mediated growth responses

Authors: Brandt, Ronny; Salla-Martret, Merce; Bou-Torrent, Jordi; Musielak, Thomas; Stahl, Mark; Lanz, Christa; Ott, Felix; +11 Authors

Genome‐wide binding‐site analysis of REVOLUTA reveals a link between leaf patterning and light‐mediated growth responses

Abstract

SummaryUnlike the situation in animals, the final morphology of the plant body is highly modulated by the environment. During Arabidopsis development, intrinsic factors provide the framework for basic patterning processes. CLASS III HOMEODOMAIN LEUCINE ZIPPER (HD‐ZIPIII) transcription factors are involved in embryo, shoot and root patterning. During vegetative growth HD‐ZIPIII proteins control several polarity set‐up processes such as in leaves and the vascular system. We have identified several direct target genes of the HD‐ZIPIII transcription factor REVOLUTA (REV) using a chromatin immunoprecipitation/DNA sequencing (ChIP‐Seq) approach. This analysis revealed that REV acts upstream of auxin biosynthesis and affects directly the expression of several class II HD‐ZIP transcription factors that have been shown to act in the shade‐avoidance response pathway. We show that, as well as involvement in basic patterning, HD‐ZIPIII transcription factors have a critical role in the control of the elongation growth that is induced when plants experience shade. Leaf polarity is established by the opposed actions of HD‐ZIPIII and KANADI transcription factors. Finally, our study reveals that the module that consists of HD‐ZIPIII/KANADI transcription factors controls shade growth antagonistically and that this antagonism is manifested in the opposed regulation of shared target genes.

Country
France
Keywords

[SDV.SA]Life Sciences [q-bio]/Agricultural sciences, Chromatin Immunoprecipitation, Arabidopsis thaliana, Light, Arabidopsis, SHADE-AVOIDANCE RESPONSES, Gene Expression Regulation, Plant, HD-ZIPII, TRANSCRIPTION, AUXIN BIOSYNTHESIS, shade avoidance, In Situ Hybridization, Phylogeny, Body Patterning, Homeodomain Proteins, [SDV.SA] Life Sciences [q-bio]/Agricultural sciences, Binding Sites, Indoleacetic Acids, Arabidopsis Proteins, PLANT DEVELOPMENT, Gene Expression Regulation, Developmental, HD-ZIPIII, Sequence Analysis, DNA, ARABIDOPSIS, GENE, Adaptation, Physiological, Hypocotyl, Plant Leaves, Mutation, CELL FATE, REGULATOR, auxin, ZIP, leaf development, Genome, Plant, POLARITY, Signal Transduction, Transcription Factors

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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116
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