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Environmental Microbiology
Article . 2018 . Peer-reviewed
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SuhB, a small non‐coding RNA involved in catabolite repression of tetralin degradation genes in Sphingopyxis granuli strain TFA

Authors: Inmaculada García‐Romero; Konrad U. Förstner; Eduardo Santero; Belén Floriano;

SuhB, a small non‐coding RNA involved in catabolite repression of tetralin degradation genes in Sphingopyxis granuli strain TFA

Abstract

Summary Global dRNA‐seq analysis of transcription start sites combined with in silico annotation using Infernal software revealed the expression of 91 putative non‐coding sRNA in Sphingopyxis granuli TFA cells grown on different carbon sources. Excluding housekeeping sRNAs, only one additional sRNA, which belongs to the Rfam SuhB family (RF00519), was detected by Infernal but with an incorrect size according to the experimental results. SuhB is highly conserved across the Sphingopyxis genus. Expression data revealed that SuhB is present in rapidly growing TFA cells. A suhB deletion mutant exhibited de‐repression of tetralin degradation ( thn ) gene expression and higher amounts of their LysR‐type activator, ThnR, under conditions of carbon catabolite repression (CCR). Interaction between SuhB and the 5′UTR of thnR mRNA was demonstrated in vitro . Moreover, co‐immunoprecipitation experiments, combined with fluorescence measurements of gfp fusions to the 5′UTR of thnR mRNA and the phenotype of an hfq deletion mutant, suggest the involvement of Hfq in this interaction. Taken together, these data support an Hfq‐mediated repressive role for SuhB, on ThnR mRNA translation that prevents thn gene induction. SuhB, which is a highly conserved sRNA in the Sphingopyxis genus, is the first identified element directly involved in CCR of thn gene expression in S. granuli strain TFA.

Country
United Kingdom
Keywords

Catabolite Repression, Sphingomonadaceae, RNA, Bacterial, Biodegradation, Environmental, 572, Tetrahydronaphthalenes, 500, RNA, Small Untranslated, Gene Expression Regulation, Bacterial, Transcription Initiation Site

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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