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Journal of Molecular Graphics and Modelling
Article . 2017 . Peer-reviewed
License: Elsevier TDM
Data sources: Crossref
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Insights into protein-carbohydrate recognition: A novel binding mechanism for CBM family 43

Authors: Mompeán, Miguel; Villalba, M.; Bruix Bayés, Marta; Zamora-Carreras, H.;

Insights into protein-carbohydrate recognition: A novel binding mechanism for CBM family 43

Abstract

Despite the growing number of carbohydrate-binding modules (CBMs) that are being uncovered, information on the structural determinants for the sugar-binding regions at atomic resolution is scarce. It is widely accepted that aromatic and H-bonding interactions govern these processes, and reported simulations and theoretical calculations are valuable tools to quantify and understand these interactions. We present here a computational model derived from experimental data that provide a unique atomistic picture of an uncharacterized binding mode of laminarin to the CBM family 43. The present study, which is among the first describing an isolated CBM with the bound carbohydrate, is complemented with quantum mechanical calculations. This allows us to attribute certain experimental observations (binding affinities) to key interactions (H-bonds and aromatic stacking), on the basis of NMR-driven docking structure.

Keywords

Molecular Docking Simulation, Carbohydrates, Hydrogen Bonding, Receptors, Cell Surface, Amino Acid Sequence, Glucans, Protein Binding

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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