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Acta Crystallographica Section D Biological Crystallography
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A complement to the modern crystallographer's toolbox: caged gadolinium complexes with versatile binding modes

Authors: Stelter, Meike; Molina, Rafael; Jeudy, Sandra; Kahn, Richard; Abergel, Chantal; Hermoso, Juan;

A complement to the modern crystallographer's toolbox: caged gadolinium complexes with versatile binding modes

Abstract

A set of seven caged gadolinium complexes were used as vectors for introducing the chelated Gd3+ion into protein crystals in order to provide strong anomalous scattering forde novophasing. The complexes contained multidentate ligand molecules with different functional groups to provide a panel of possible interactions with the protein. An exhaustive crystallographic analysis showed them to be nondisruptive to the diffraction quality of the prepared derivative crystals, and as many as 50% of the derivatives allowed the determination of accurate phases, leading to high-quality experimental electron-density maps. At least two successful derivatives were identified for all tested proteins. Structure refinement showed that the complexes bind to the protein surface or solvent-accessible cavities, involving hydrogen bonds, electrostatic and CH–π interactions, explaining their versatile binding modes. Their high phasing power, complementary binding modes and ease of use make them highly suitable as a heavy-atom screen for high-throughputde novostructure determination, in combination with the SAD method. They can also provide a reliable tool for the development of new methods such as serial femtosecond crystallography.

Country
France
Keywords

Anomalous scattering, Binding Sites, Molecular Structure, Molecular Biology/Structural Biology [q-bio.BM], [SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], MESH: Crystallography, MESH: Molecular Structure, Gadolinium, 540, Crystallography, X-Ray, 530, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, MESH: Binding Sites, Experimental phasing, Gd complexes, MESH: X-Ray, MESH: Gadolinium

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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