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RNA/aTNA Chimeras: RNAi Effects and Nucleases Resistance of Single and Double Stranded RNAs

Authors: Adele Alagia; Montserrat Terrazas; Ramon Eritja;

RNA/aTNA Chimeras: RNAi Effects and Nucleases Resistance of Single and Double Stranded RNAs

Abstract

The RNA interference pathway (RNAi) is a specific and powerful biological process, triggered by small non-coding RNA molecules and involved in gene expression regulation. In this work, we explored the possibility of increasing the biological stability of these RNA molecules by replacing their natural ribose ring with an acyclic L-threoninol backbone. In particular, this modification has been incorporated at certain positions of the oligonucleotide strands and its effects on the biological properties of the siRNA have been evaluated. In vitro cellular RNAi assays have demonstrated that the L-threoninol backbone is well tolerated by the RNAi machinery in both double and single-stranded fashion, with activities significantly higher than those evinced by the unmodified RNAs and comparable to the well-known phosphorothioate modification. Additionally, this modification conferred extremely strong resistance to serum and 3′/5′-exonucleases. In view of these results, we applied this modification to the knockdown of a therapeutically relevant human gene such as apolipoprotein B (ApoB). Further studies on the activation of the innate immune system showed that L-threoninol-modified RNAs are slightly less stimulatory than unmodified RNAs.

Country
Spain
Keywords

5'-exonuclease, Oligonucleotides, Organic chemistry, serum resistance, Article, single-stranded siRNA, QD241-441, Single-stranded siRNA, 3′-exonuclease, Cell Line, Tumor, 3′-overhang chemical modification, SiRNA, Regulació genètica, Humans, 3'-exonuclease, RNA, Small Interfering, Butylene Glycols, RNA, Double-Stranded, Serum resistance, Genetic regulation, Chimera, Oligonucleòtids, Hep G2 Cells, Endonucleases, Amino Alcohols, 5′-exonuclease, L-threoninol, Apolipoproteins, 3'-overhang chemical modification, ApoB gene, siRNA, RNAi, RNA, Apoproteïnes, RNA Interference, HeLa Cells

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
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12
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87
80
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