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Munin - Open Research Archive
Master thesis . 2015
License: CC BY NC SA
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Prevalence of nptII genes in three different soil fields in Tromsø

Authors: Steffensen, Andreas Ellingsen;

Prevalence of nptII genes in three different soil fields in Tromsø

Abstract

The main goal has been to establish methods to be able to study the rate of nptII in soil in Tromsø, in aerobe cultivation of bacteria and in soil DNA. Soil is a complex and diverse environment for bacteria, and it has all the qualities required to be a potential reservoir for antibiotic resistance genes. In collaboration with Bioforsk Tromsø we have gathered soil samples from soil where it has been used manure yearly, soil where it has been approx. seven years since it was used manure and soil where it has never been used manure as fertilizer. Out of totally 106-107 cultivable bacteria from the different soils, our results show that approx. 3-12% of the bacteria are Km resistant but none of the approx. 550 Km resistant bacteria we have analysed carry the nptII gene. Since only 1-2% of soil bacteria can be grown we also did a direct analysis of soil DNA from the three separate fields by isolating and purifying DNA from soil before running qualitative and quantitative PCR. The conclusion of our pilot study is that there is no or low rate of the nptII gene in bacteria and soil DNA in the three separate soils we have examined in Tromsø.

Country
Norway
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Keywords

kanamycin, VDP::Medical disciplines: 700::Basic medical, dental and veterinary science disciplines: 710::Pharmacology: 728, ARMG, VDP::Medisinske Fag: 700::Basale medisinske, odontologiske og veterinærmedisinske fag: 710::Farmakologi: 728, nptll, FAR-3901, soil

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
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