Powered by OpenAIRE graph
Found an issue? Give us feedback
downloadFull-Text
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ CORE (RIOXX-UK Aggre...arrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
CORE (RIOXX-UK Aggregator)
Conference object . 2021
License: CC BY
Full-Text: https://strathprints.strath.ac.uk/76077/1/Hobbs_etal_MSAC_2021_Comprehensive_evaluation_of_CAZyme_prediction_tools_in_fungal_and_bacterial_species.pdf
Data sources: CORE (RIOXX-UK Aggregator)
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
Strathprints
Conference object . 2021
License: CC BY
Full-Text: https://strathprints.strath.ac.uk/76077/1/Hobbs_etal_MSAC_2021_Comprehensive_evaluation_of_CAZyme_prediction_tools_in_fungal_and_bacterial_species.pdf
Data sources: Strathprints
St Andrews Research Repository
Conference object . 2021
Data sources: St Andrews Research Repository
 View all 3 versions
Claim

Comprehensive evaluation of CAZyme prediction tools in fungal and bacterial species

descriptionPublicationkeyboard_double_arrow_right Conference object 04 Apr 2021 United Kingdom English
Authors: Hobbs, Emma; Gloster, Tracey; Chapman, Sean; Pritchard, Leighton;

handle: 10023/24612

Comprehensive evaluation of CAZyme prediction tools in fungal and bacterial species

Abstract

Carbohydrate Active enZymes (CAZymes) are pivotal in pathogen recognition, signalling, structure and energy metabolism. CAZy is the most comprehensive CAZyme database, cataloguing CAZymes into sequence-based CAZy families. The CAZyme prediction tools dbCAN, CUPP and eCAMI annotate CAZymes with CAZy families. However, these tools have not been independently evaluated on a common high-quality dataset. Additionally, previous evaluations did not evaluate the binary classification of CAZymes/non-CAZymes, and the multilabel classification of CAZymes to multiple CAZy families.

Non peer reviewed

Country
United Kingdom
Related Organizations
Keywords

CAZyme prediction, dbCAN, CAZy, CUPP, eCAMI, QR Microbiology, CAZymes, QR

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green
Related to Research communities
UArctic