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</script>Outer membrane proteins (OMPs) are the proteins in the surface of Gram-negative bacteria. These proteins have diverse functions but a single topology: the β-barrel. Sequence analysis has suggested that this common fold is a β-hairpin repeat protein, and that amplification of the β-hairpin has resulted in 8–26-stranded barrels. Using an integrated approach that combines sequence and structural analyses, we find events in which non-amplification diversification also increases barrel strand number. Our network-based analysis reveals strand-number-based evolutionary pathways, including one that progresses from a primordial 8-stranded barrel to 16-strands and further, to 18-strands. Among these pathways are mechanisms of strand number accretion without domain duplication, like a loop-to-hairpin transition. These mechanisms illustrate perpetuation of repeat protein topology without genetic duplication, likely induced by the hydrophobic membrane. Finally, we find that the evolutionary trace is particularly prominent in the C-terminal half of OMPs, implicating this region in the nucleation of OMP folding.
Repetitive Sequences, Amino Acid, Evolutionary Biology, Protein Folding, QH301-705.5, Protein Conformation, Science, Q, R, outer membrane beta barrels, Dermatan Sulfate, beta barrels, Evolution, Molecular, Gram-Negative Bacteria, outer membrane proteins, beta hairpin, Medicine, Biology (General), repeat proteins, Bacterial Outer Membrane Proteins
Repetitive Sequences, Amino Acid, Evolutionary Biology, Protein Folding, QH301-705.5, Protein Conformation, Science, Q, R, outer membrane beta barrels, Dermatan Sulfate, beta barrels, Evolution, Molecular, Gram-Negative Bacteria, outer membrane proteins, beta hairpin, Medicine, Biology (General), repeat proteins, Bacterial Outer Membrane Proteins
| citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 30 | |
| popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Top 10% | |
| influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
| impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Top 10% |
