Additional file 1 of Correcting nucleotide-specific biases in high-throughput sequencing data

descriptionPublicationkeyboard_double_arrow_right Research 01 Jan 2017Publisher:FigshareFunded by:NIH | Gastroenterology Research..., NIH | Interpreting molecular ro...

Authors: Wang, Jeremy; Quach, Bryan; Furey, Terrence;

doi: 10.6084/m9.figshare.c.3841099_d1 , 10.6084/m9.figshare.c.3841099_d1.v1

Additional file 1 of Correcting nucleotide-specific biases in high-throughput sequencing data

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Abstract

Figure S1. GM12878 DNase-seq 5-mer tile covariance matrix. The pairwise correlation is shown between bias values of 5-mer tiles in a 160bp window surrounding the 5â end of aligned reads. The block structure between tiles 0 and 3 indicates correlation between adjacent k-mer frequencies within DNase-seq reads. (PDF 203 kb)

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Correcting nucleotide-specific biases in high-throughput sequencing data
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NIH| Gastroenterology Research Training, NIH| Interpreting molecular role of DNA variants associated with Crohn's Disease through integrative analysis of open chromatin, epigenome and transcriptome data in diverse and relevant tissues and cells