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Research . 2015
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Article . 2015
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Research . 2015
License: CC BY
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Additional file 4: Figure S4. of HiCPlotter integrates genomic data with interaction matrices

Authors: Akdemir, Kadir; Chin, Lynda;

Additional file 4: Figure S4. of HiCPlotter integrates genomic data with interaction matrices

Abstract

Example visualization of 4C and ChIP-Seq data as histograms with HiCPlotter. Interaction matrix of mouse embryonic stem cells displayed as heatmaps (a) and rotated half matrix (b), in which the range of the rotated half matrix is 8 megabases from the diagonal. c Histograms representing 4C genomic assay signals: four tracks are displayed for Hoxd4 interactions in mouse embryonic stem cells and mouse E9.5 tail bud, and Hoxd13 interactions in mouse embryonic stem cells and mouse E9.5 tail bud. d Histogram representing CTCF ChIP- Seq signal in mouse embryonic stem cells. e Custom domain visualization as triangles. TADs reported in mouse embryonic stem cells are displayed. (PDF 114 kb)

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
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