The fungal species contain diverse transposable elements and repetitive sequences up to ~10% of their genome. It has been reported that distribution of transposable elements tends to correlate with the host range of the pathogen. Moreover, transposable elements cause the loss of an avirulence gene in the pathogen, which resulted in disease on a resistance cultivar. Thus, the transposable elements in the fungal pathogens may be one of the key factors driving the plant-fungus interactive evolution. In this article, we reviewed classification and biological functions of transposable elements in Magnaporthe species.