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RNA-templated diversity generation via reverse transcription and homologous recombination: an evolutionary hypothesis

Authors: Mariani, Matteo G. E.;

RNA-templated diversity generation via reverse transcription and homologous recombination: an evolutionary hypothesis

Abstract

It is commonly believed that organisms diversify their genomes primarily through point mutations, insertions, and dele- tions. Here, I propose a complementary mechanism: Diversity Generation by Reverse Transcriptase (DGbyRT), in which cellular or exogenous RNAs are reverse transcribed into cDNA and integrated into the genome via homology-directed recombination. This process enables the reuse of modular genetic information—derived from both coding and non-coding transcripts—thereby biasing variation toward regions already represented in the transcriptome and potentially altering the statistical distribution of the explored sequence space. DGbyRT draws on mechanisms observed across life, including diver- sity-generating retroelements, retrotransposons, telomerase, and somatic hypermutation, and may involve endogenous RTs such as Pol-θ. I hypothesise that transcribed pseudogenes and duplicated sequences may serve as reservoirs for recombinable modules. DGbyRT may also contribute to somatic-to-germline communication, with reverse-transcribed RNAs crossing the Weismann barrier to influence heritable change. Inspired by synthetic biology tools such as the AutoDiMe method, DGbyRT is presented as a context-dependent diversification mechanism whose frequency may be modulated by cellular regulation of reverse transcriptase activity. As RNA-based technologies advance, understanding natural reverse transcription becomes increasingly relevant to both evolutionary biology and therapeutic innovation.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average