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Article . 2017
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Article . 2017
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Reversible DNA codes over $F_{16}+uF_{16}+vF_{16}+uvF_{16}$

Reversible DNA codes over \(F_{16}+uF_{16}+vF_{16}+uvF_{16}\)
Authors: Fatmanur Gursoy; Elif Segah Oztas; Irfan Siap;

Reversible DNA codes over $F_{16}+uF_{16}+vF_{16}+uvF_{16}$

Abstract

In this paper we study the structure of specific linear codes called DNA codes. The first attempts on studying such codes have been proposed over four element rings which are naturally matched with DNA four letters. Later, double (pair) DNA strings or in general $k$-DNA strings called $k$-mers have been matched with some special rings and codes over such rings with specific properties are studied. However, these matchings in general are not straightforward and because of the fact that the reverse of the codewords ($k$-mers) need to exist in the code, the matching problem is difficult and it is referred to as the reversibility problem. Here, 8-mers (DNA 8-bases) are matched with the ring elements of $R_{16}=F_{16}+uF_{16}+vF_{16}+uvF_{16}.$ Furthermore, cyclic codes over the ring $R_{16}$ where the multiplication is taken to be noncommutative with respect to the automorphism $��$ are studied. The preference on the skewness is shown to be very useful and practical especially since this serves as a direct solution to the reversibility problem.

Country
Turkey
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Keywords

DNA codes, FOS: Mathematics, Mathematics - Combinatorics, Combinatorics (math.CO), Protein sequences, DNA sequences, skew cyclic codes, reversible codes, Cyclic codes, 94B15, 94B05, 92D20, Linear codes (general theory)

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
5
Top 10%
Average
Average
Green
gold