Developing effective and green methods for food analysis and separation has become an urgent issue regarding the ever-increasing concern of food quality and safety. Ionic liquids (ILs) are a new chemical medium and soft functional material developed under the framework of green chemistry and possess many unique properties, such as low melting points, low-to-negligible vapor pressures, excellent solubility, structural designability and high thermal stability. Combining ILs with extraction techniques not only takes advantage of ILs but also overcomes the disadvantages of traditional extraction methods. This subject has attracted intensive research efforts recently. Here, we present a brief review of the current research status and latest developments regarding the application of IL-assisted microextraction, including dispersive liquid–liquid microextraction (DLLME) and solid-phase microextraction (SPME), in food analysis and separation. The practical applications of ILs in determining toxic and harmful substances in food specimens with quite different natures are summarized and discussed. The critical function of ILs and the advantages of IL-based microextraction techniques over conventional extraction techniques are discussed in detail. Additionally, the recovery of ILs using different approaches is also presented to comply with green analytical chemistry requirements.