Hydrogen energy is considered the most promising clean energy in the 21st century, so hydrogen refuelling stations (HRSs) are crucial facilities for storage and supply. HRSs might experience hydrogen leakage (HL) incidents during their operation. Hydrogen-producing and refuelling integrated stations (HPRISs) could make thermal risks even more prominent than those of HRSs. Considering HL as the target in the HPRIS, through the method of fault tree analysis (FTA) and analytic hierarchy process (AHP), the importance degree and probability importance were appraised to obtain indicators for the weight of accident level. In addition, the influence of HL from storage tanks under ambient wind conditions was analysed using the specific model. Based upon risk analysis of FTA, AHP, and ALOHA, preventive measures were obtained. Through an evaluation of importance degree and probability importance, it was concluded that misoperation, material ageing, inadequate maintenance, and improper design were four dominant factors contributing to accidents. Furthermore, four crucial factors contributing to accidents were identified by the analysis of the weight of the HL event with AHP: heat, misoperation, inadequate maintenance, and valve failure. Combining the causal analysis of FTA with the expert weights from AHP enables the identification of additional crucial factors in risk. The extent of the hazard increased with wind speed, and yet wind direction did not distinctly affect the extent of the risk. However, this did affect the direction in which the risk spreads. It is extremely vital to rationally plan upwind and downwind buildings or structures, equipment, and facilities. The available findings of the research could provide theoretical guidance for the applications and promotion of hydrogen energy in China, as well as for the proactive safety and feasible emergency management of HPRISs.