Floating photovoltaic (FPV) systems are promising for coastal aquaculture where reliable electricity is essential for pumping, oxygenation, sensing, and control. A sustainable FPV–storage hybrid tailored to monsoon-prone sites is developed, with emphasis on energy efficiency and structural resilience. The prototype combines dual-axis solar tracking with a spray-cooling and cleaning subsystem and an active wind-protection strategy that automatically flattens the array when wind speed exceeds 8.0 m/s. Temperature, wind speed, and irradiance sensors are coordinated by an Arduino-based supervisor to optimize tracking, thermal management, and tilt control. A 10 W floating module and a fixed-tilt reference were fabricated and tested outdoors in Penghu, Taiwan. The FPV achieved a 25.17% energy gain on a sunny day and a 40.29% gain under overcast and windy conditions, while module temperature remained below 45 °C through on-demand spraying, reducing thermal losses. In addition, a hybrid energy storage system (HESS), integrating a 12 V/10 Ah lithium-ion battery and a 12 V/24 Ah lead-acid battery, was validated using a priority charging strategy. During testing, the lithium-ion unit was first charged to stabilize the control circuits, after which excess solar energy was redirected to the lead-acid battery for long-term storage. This hierarchical design ensured both immediate power stability and extended endurance under cloudy or low-irradiance conditions. The results demonstrate a practical, low-cost, and modular pathway to couple FPV with hybrid storage for coastal energy resilience, improving yield and maintaining safe operation during adverse weather, and enabling scalable deployment across cage-aquaculture facilities.