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Bioengineering
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Bioengineering
Article . 2025
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https://dx.doi.org/10.18452/35...
Article . 2025
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Reinvestigation of Absorption Spectroscopic Thermal Dynamics of Archaerhodopsin 3 Based Voltage Sensor QuasAr1

Authors: Alfons Penzkofer; Arita Silapetere; Peter Hegemann;

Reinvestigation of Absorption Spectroscopic Thermal Dynamics of Archaerhodopsin 3 Based Voltage Sensor QuasAr1

Abstract

The long-time absorption spectroscopic development of the genetically encoded microbial rhodopsin fluorescent voltage indicator QuasAr1 at room temperature in the dark was reinvestigated, mainly theoretically. The data analysis indicates protein aggregation within one day to some ten-nanometer sized Mie scattering particles. The absorption coefficient spectra can be deduced from measured attenuation coefficient spectra by scattering contribution subtraction. The initially present protonated retinal Schiff base (PRSB) Ret_580 isomerized and then deprotonated to neutral retinal Schiff base (RSB). One part of Ret_580, Ret_580I, (fraction 43%), isomerized moderately fast to Ret_500 which then deprotonated to neutral retinal Schiff base Ret_405 (time constant ≈ 1000 h). The other part of Ret_580, Ret_580II, (fraction 57%), isomerized slowly to Ret_460 which deprotonated to Ret_340 (time constant ≈ 400 h). The dynamics are described by a differential equation system which is solved numerically. Reaction parameters are determined by fitting the simulations to the experimental results.

Country
Germany
Keywords

numerical simulation of thermal dynamics, fluorescent voltage sensor, ddc:530, absorption spectroscopic characterization, ground-state isomerization, QuasAr1; Archaerhodopsin; fluorescent voltage sensor; absorption spectroscopic characterization; protein aggregation; Rayleigh and Mie scattering; numerical simulation of thermal dynamics; ground-state isomerization; ground-state deprotonation, 570 Biologie, 530 Physik, Article, ground-state deprotonation, protein aggregation, Archaerhodopsin, ddc:570, Rayleigh and Mie scattering, QuasAr1

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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gold