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Quality control on the frontier

descriptionPublicationkeyboard_double_arrow_right Article , Conference object , Other literature type 27 May 2014Publisher:Frontiers Media SAJournal:Frontiers in Genetics, volume 5 (eissn: 1664-8021, Copyright policy )Funded by:WT | Institutional Strategic S..., WT | Maximizing South West Bio..., UKRI | Engineering Synthetic Mic...
Authors: Karen Moore; Audrey Farbos; Paul O'Neill; Konrad Paszkiewicz;

doi: 10.3389/fgene.2014.00157

pmid: 24904650

pmc: PMC4033843

Quality control on the frontier

Abstract

In the world of high-throughput sequencing there are numerous challenges to effective data quality control. There are no single quality metrics which are appropriate in all conditions. Here we detail the different open source software used at the Exeter Sequencing Service to provide generic quality control information, as well as more specific metrics for genomic and transcriptomic libraries run on Illumina platforms.

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Keywords

best practice, Quality control, Best practice, sequencing, QH426-470, core-facility, Core-facility, contamination, Illumina, Genetics, Sequencing, quality control

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 18
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
18
Top 10%
Average
Top 10%
Green
gold
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