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https://doi.org/10.24926/54871...
Article . 2019 . Peer-reviewed
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Attention Guided 3D U-Net for KiTS19

Authors: Zhong, Zhusi; Zhang, Zhenxi; Jiao, Zhicheng;

Attention Guided 3D U-Net for KiTS19

Abstract

We use a two-stage 3d U-Net model to predict the multi channels segmentations from coarse to fine. The second stage is guided by the predictions from the first stage. 1 Method We proposed a two stages method to segment CT image from coarse to fine. The two stages are trained with different learning scope and are assigned with different learning missions. 1.1 Stage 1 – Coarse stage Data preprocess. Firstly, we downscale the training data to a normal shape, in order to make sure the model can take a whole image at once. All the images and segmentations are downscale to 128*128*32 (height*width*depth). The segmentation files are transformed to 3-channels arrays, in which the channels-wise pixel values represent kidneys, tumors and the background (without kidneys and tumors) in order. Training. We train the standard 3D U-Net follow with a softmax layer. While training, we apply some data augmentation to the training data, including normalize, random contrast, random flip and random rotate. We input all the 210 cases training data and train the model to regress the multi-channel segmentations. We apply with pytorch, and the learning rate is 0.1 which divide 0.1 in 300000 epochs and 500000 epochs. We use the Binary Cross Entropy Loss as loss function. Predicting. The 90 cases testing images are preprocessed the same with the training images then input to the trained model. The channel-wise predictions are scaled back the original shape. We take the first 2 channels of the predictions, represent as the segmentation of kidneys and tumors, then package as the .nii.gz files.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
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bronze