The overarching goals of the 'Kootenai River Floodplain Ecosystem Operational Loss Assessment, Protection, Mitigation and Rehabilitation' Project (BPA Project No.2002-011-00) are to: (1) assess abiotic and biotic factors (i.e., geomorphologic, hydrological, aquatic and riparian/floodplain communities) in determining a definitive composition of ecological integrity, (2) develop strategies to assess and mitigate losses of ecosystem functions, and (3) produce a regional operational loss assessment framework. To produce a scientifically defensible, repeatable, and complete assessment tool, KTOI assembled a team of top scientists in the fields of hydrology, hydraulics, ornithology, entomology, statistics, and river ecology, among other expertise. This advisory team is known as the Research Design and Review Team (RDRT). The RDRT scientists drive the review, selection, and adaptive management of the research designs to evaluate the ecologic functions lost due to the operation of federal hydropower facilities. The unique nature of this project (scientific team, newest/best science, adaptive management, assessment of ecological functions, etc.) has been to work in a dynamic RDRT process. In addition to being multidisciplinary, this model KTOI project provides a stark contrast to the sometimes inflexible process (review, re-review, budgets, etc.) of the Columbia River Basin Fish and Wildlife Program. The project RDRT is assembled annually, withmore » subgroups meeting as needed throughout the year to address project issues, analyses, review, and interpretation. Activities of RDRT coordinated and directed the selection of research and assessment methodologies appropriate for the Kootenai River Watershed and potential for regional application in the Columbia River Basin. The entire RDRT continues to meet annually to update and discuss project progress. RDRT Subcontractors work in smaller groups throughout the year to meet project objectives. Determining the extent to which ecological systems are experiencing anthropogenic disturbance and change in structure and function is critical for long term conservation of biotic diversity in the face of changing landscapes and land use. KTOI and the RDRT propose a concept based on incorporating hydrologic, aquatic, and terrestrial components into an operations-based assessment framework to assess ecological losses as shown in Figure E-1.« less