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Data Curation of Extracellular Enzyme Activity Spectrophotometric or Fluorometric Data

Authors: Niels Gudmand Christiansen; Paul Iturbe-Espinoza; Rumakanta Sapkota; Anne Winding;

Data Curation of Extracellular Enzyme Activity Spectrophotometric or Fluorometric Data

Abstract

Extracellular Enzyme Activity (EEA) assay is an important tool in soil ecology. During data analyses, we experienced outlier time-point measurements and samples deviating from a linear development. However, we lacked a satisfying method for curating these data, and our goal is to provide a standardized and transparent method for data curation of EEA data. This was done in the form of an R function that allows for both customized and standardized approaches to data curation of EEA data. When testing the function on multiple datasets, we found that our data curation did change EEA levels, but only in instances close to minimum detection levels. During curation, R² generally increased, resulting in more samples with acceptable R² values. The function provides a relatively unbiased, easy-to-use method for EEA data curation that will hopefully improve the transparency and standardization of EEA data curation. Main outcomes:•Function for curation of Extracellular Enzyme Activity data.•Improving transparency and standardization.•Relatively unbiased, easy-to-use method.

Country
Denmark
Keywords

R2-values, Standardized residuals, Science, Q, Environmental Science, Microorganisms, Outliers, Data curation of EEA data from MUF-substrate measurements

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    3
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
Green
gold
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