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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Apolloarrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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Vibrionaceae genome dynamics

Authors: McGimpsey, Stephanie;

Vibrionaceae genome dynamics

Abstract

*Vibrionaceae* is a family in the class *Gammaproteobacteria* that has 11 genera that are mostly found in marine niches. It is an important family from a human health perspective due to *Vibrio cholerae* causing millions of infections every year. Other members of the family cause millions of dollars in damage to the aquaculture industry due to their pathogenesis of fish. Research on the family doesn't tend to span the entirety of species sequenced and this thesis's work aims to understand characteristics of the species in the context of the whole family dynamics. General sequence characteristics of publicly available *Vibrionaceae* such as genome GC%, genome length, codon bias, plasmids, virulence and AMR genes are identified across the family in this research. From this a subset of genomes focused around *V. cholerae*, *V. vulnificus* and *V. parahaemolyticus* were selected for more in-depth study of gene content and potential horizontal gene transfer. To expand upon the dynamics of gene flow seen within publicly available data bacterial samples were collected from the English Channel and sequenced to identify potential gene flow in a natural population to species of other bacterial families.

Country
United Kingdom
Related Organizations
Keywords

FOS: Computer and information sciences, English Channel, Secretion systems, Bioinformatics, FOS: Biological sciences, Virulence genes, Vibrionaceae, AMR, Genomics, Microbiology

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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