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https://doi.org/10.17504/proto...
Article . 2018 . Peer-reviewed
License: CC BY
Data sources: Crossref
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Environmental DNA (eDNA) 18S metabarcoding Illumina MiSeq NGS PCR Protocol v1

descriptionPublicationkeyboard_double_arrow_right Article 29 Jan 2018Publisher:Springer Science and Business Media LLC
Authors: Collin Closek; Anni Djurhuus; Katie Pitz; Ryan Kelly; Reiko Michisaki; Kristine Walz; Hilary Starks; +3 Authors

doi: 10.17504/protocols.io.mv2c68e

Environmental DNA (eDNA) 18S metabarcoding Illumina MiSeq NGS PCR Protocol v1

Abstract

This protocol is aimed at amplifying the 18S rRNA hypervariable region 9 (18S V9) in eukaryotes with a focus on microbial eukaryotes. Amplicons generated using this protocol can then be sequenced using the Illumina platform. The primers (1391F, EukBr) utilized in this protocol are based on the primer utilized in Amaral-Zettler et al 2009 and the Earth Microbiome Project (EMP). CitationsAmaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM (2009) A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes. PLoS ONE 4(7): e6372. doi:10.1371/journal.pone.0006372Earth Microbiome Project - http://www.earthmicrobiome.org/emp-standard-protocols/18s/

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 2
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Average
Average
Average
hybrid