
Abstract We present a mathematically precise formulation of total linkage disequilibrium between multiple loci as the deviation from probabilistic independence and provide explicit formulas for all higher-order terms of linkage disequilibrium, thereby combining J. Dausset et al.'s 1978 definition of linkage disequilibrium with H. Geiringer's 1944 approach. We recursively decompose higher-order linkage disequilibrium terms into lower-order ones. Our greatest simplification comes from defining linkage disequilibrium at a single locus as allele frequency at that locus. At each level, decomposition of linkage disequilibrium is mathematically equivalent to number theoretic compositions of positive integers; i.e., we have converted a genetic decomposition into a mathematical decomposition.
Gene Frequency, Models, Genetic, Species Specificity, Genetic Variation, Epistasis, Genetic, Biological Evolution, Alleles, Linkage Disequilibrium, Mathematics, Probability
Gene Frequency, Models, Genetic, Species Specificity, Genetic Variation, Epistasis, Genetic, Biological Evolution, Alleles, Linkage Disequilibrium, Mathematics, Probability
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