Name: Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
Creator: Martin, Andrew C. R.
Keywords: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Software Tool Article

descriptionPublicationkeyboard_double_arrow_right Article , Conference object , Other literature type 23 Oct 2014 English Publisher:F1000 Research LtdJournal:F1000Research, volume 3, page 249 (eissn: 2046-1402,

Authors: Martin, Andrew C. R.;

doi: 10.12688/f1000research.5486.1

pmid: 25653836

pmc: PMC4304231

Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)

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Abstract

The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/.

Related Organizations

Humboldt-Universität zu Berlin
Germany
UNIVERSITY COLLEGE LONDON, Bartlett School of Planning
United Kingdom
Birkbeck, University of London
United Kingdom
Universitätsmedizin Berlin
Germany
Charité - University Medicine Berlin
Germany

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Keywords

Software Tool Article

3 Research products, page 1 of 1

Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) [v1; ref status: indexed, http://f1000r.es/4io]
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