Abstract In this paper several configurations of the fifth-generation Pennsylvania State University–National Center for Atmospheric Research (PSU–NCAR) Mesoscale Model (MM5), which is implemented at Beijing Institute of Urban Meteorology in China, are used to demonstrate the initial noise problem caused either by interpolating global model fields onto an MM5 grid or by using MM5 objective analysis schemes. An implementation of a digital filter initialization (DFI) package to MM5 is then documented. A heavy rain case study and intermittent data assimilation experiments are used to assess the impact of DFI on MM5 forecasts. It is shown that DFI effectively filters out the noise and produces a balanced initial model state. It is also shown that DFI improves the spinup aspects for precipitation, leading to better scores for short-range precipitation forecasts. The issues related to the initialization of variables that are not observed and/or analyzed, in particular those for nonhydrostatic quantities, are discussed.