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ACM Transactions on Parallel Computing
Article . 2025 . Peer-reviewed
License: CC BY NC SA
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https://dx.doi.org/10.48550/ar...
Article . 2020
License: arXiv Non-Exclusive Distribution
Data sources: Datacite
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Article . 2025
Data sources: DBLP
DBLP
Article . 2020
Data sources: DBLP
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KNN-DBSCAN: a DBSCAN in high dimensions

Authors: Youguang Chen; William Ruys; George Biros;

KNN-DBSCAN: a DBSCAN in high dimensions

Abstract

Clustering is a fundamental task in machine learning. One of the most successful and broadly used algorithms is DBSCAN, a density-based clustering algorithm. DBSCAN requires ϵ-nearest neighbor graphs of the input dataset, which are computed with range-search algorithms and spatial data structures like KD-trees. Despite many efforts to design scalable implementations for DBSCAN, existing work is limited to low-dimensional datasets, as constructing ϵ-nearest neighbor graphs can be expensive in high-dimensions. This article introduces a modified DBSCAN, using k -nearest neighbor ( k NN) graphs to improve efficiency. We outline conditions for k NN-DBSCAN to match DBSCAN’s results and present a parallel implementation using OpenMP and MPI for shared and distributed memory systems. Testing on datasets up to 32 dimensions, we achieve remarkable scalability. Our implementation clusters one billion 3D points in under one second on 28K cores at TACC’s Frontera system. In a larger run, we cluster 65 billion points in 20 dimensions in under 40 seconds using 114,688 cores. Our method is up to 37× faster than state-of-the-art parallel DBSCAN on a 20-dimensional dataset with 4 million points. Code is available at https://github.com/ut-padas/knndbscan .

Keywords

FOS: Computer and information sciences, Computer Science - Distributed, Parallel, and Cluster Computing, Distributed, Parallel, and Cluster Computing (cs.DC)

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Top 10%
Average
Average
Green
hybrid