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Science Advances
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Identification of proteins influencing CRISPR-associated transposases for enhanced genome editing

Authors: Leo C.T. Song; Amanda T.P. Alker; Agnès Oromí-Bosch; Sophia E. Swartz; Jonathan N.V. Martinson; Jigyasa Arora; Abby M. Wang; +7 Authors

Identification of proteins influencing CRISPR-associated transposases for enhanced genome editing

Abstract

CRISPR-associated transposases (CASTs) hold tremendous potential for microbial genome editing because of their ability to integrate large DNA cargos in a programmable, site-specific manner. However, their widespread application has been hindered by poorly understood host factor requirements for transposition. To address this gap, we conducted the first genome-wide screen for host factors affecting Vibrio cholerae CAST ( Vch CAST) activity using an Escherichia coli RB-TnSeq library and identified 15 genes affecting Vch CAST transposition. Of these, seven factors were validated to improve Vch CAST activity, and two were inhibitory. Guided by the identification of homologous recombination effectors, RecD and RecA, we tested the λ-Red recombineering system in our Vch CAST editing vectors and increased editing efficiency by 55.2-fold in E. coli , 5.6-fold in Pseudomonas putida , and 10.8-fold in Klebsiella michiganensis while maintaining high target specificity and similar insertion arrangements. This study improves the understanding of factors affecting Vch CAST activity and enhances its efficiency as a bacterial genome editor.

Keywords

Gene Editing, CRISPR-Associated Proteins, Escherichia coli, Transposases, Biomedicine and Life Sciences, CRISPR-Cas Systems, Vibrio cholerae, Genome, Bacterial

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
6
Top 10%
Average
Top 10%
Green
gold