AbstractPast hydrological interactions between the Mediterranean Sea and Black Sea are poorly resolved due to complications in establishing a high‐resolution time frame for the Black Sea. We present a new greigite‐based magnetostratigraphic age model for the Mio‐Pliocene deposits of DSDP Hole 380/380A, drilled in the southwestern Black Sea. This age model is complemented by40Ar/39Ar dating of a volcanic ash layer, allowing a direct correlation of Black Sea deposits to the Messinian salinity crisis (MSC) interval of the Mediterranean Sea. Proxy records divide these DSDP deposits into four intervals: (i) Pre‐MSC marine conditions (6.1–6.0 Ma); (ii) highstand, fresh to brackish water conditions (~6.0–5.6 Ma); (iii) lowstand, fresh‐water environment (5.6–5.4 Ma) and (iv) highstand, fresh‐water conditions (5.4–post 5.0 Ma). Our results indicate the Black Sea was a major fresh‐water source during gypsum precipitation in the Mediterranean Sea. The introduction of Lago Mare fauna during the final stage of the MSC coincides with a sea‐level rise in the Black Sea. Across the Mio‐Pliocene boundary, sea‐level and salinity in the Black Sea did not change significantly.