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Physiological Entomology
Article . 2014 . Peer-reviewed
License: Wiley Online Library User Agreement
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Ligand binding and homology modelling of insect odorant‐binding proteins

Authors: Venthur, H.; Mutis, A.; Zhou, J-J.; Quiroz, A.;

Ligand binding and homology modelling of insect odorant‐binding proteins

Abstract

Abstract This review describes the main characteristics of odorant‐binding proteins ( OBP s) for homology modelling and presents a summary of structure prediction studies on insect OBP s, along with the steps involved and some limitations and improvements. The technique involves a computing approach to model protein structures and is based on a comparison between a target (unknown structure) and one or more templates (experimentally determined structures). As targets for structure prediction, OBP s are considered to play a functional role for recognition, desorption, scavenging, protection and transportation of hydrophobic molecules (odourants) across an aqueous environment (lymph) to olfactory receptor neurones ( ORN s) located in sensilla, the main olfactory units of insect antennae. Lepidopteran pheromone‐binding proteins, a subgroup of OBP s, are characterized by remarkable structural features, in which high sequence identities (approximately 30%) among these OBP s and a large number of available templates can facilitate the prediction of precise homology models. Approximately 30 studies have been performed on insect OBP s using homology modelling as a tool to predict their structures. Although some of the studies have assessed ligand‐binding affinity using structural information and biochemical measurements, few have performed docking and molecular dynamic ( MD ) simulations as a virtual method to predict best ligands. Docking and MD simulations are discussed in the context of discovery of novel semiochemicals (super‐ligands) using homology modelling to conceive further strategies in insect management.

Country
United Kingdom
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Keywords

Entomology

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
61
Top 10%
Top 10%
Top 10%
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bronze