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Molecular Ecology
Article . 2023 . Peer-reviewed
License: CC BY NC ND
Data sources: Crossref
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ZENODO
Article . 2023
License: CC BY
Data sources: ZENODO
Molecular Ecology
Article . 2023 . Peer-reviewed
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DNA methylation markers of age(ing) in non‐model animals

Authors: Tangili, Marianthi; Slettenhaar, Annabel J.; Sudyka, Joanna; Dugdale, Hannah L.; Pen, Ido; Palsbøll, Per J.; Verhulst, Simon;

DNA methylation markers of age(ing) in non‐model animals

Abstract

AbstractInferring the chronological and biological age of individuals is fundamental to population ecology and our understanding of ageing itself, its evolution, and the biological processes that affect or even cause ageing. Epigenetic clocks based on DNA methylation (DNAm) at specific CpG sites show a strong correlation with chronological age in humans, and discrepancies between inferred and actual chronological age predict morbidity and mortality. Recently, a growing number of epigenetic clocks have been developed in non‐model animals and we here review these studies. We also conduct a meta‐analysis to assess the effects of different aspects of experimental protocol on the performance of epigenetic clocks for non‐model animals. Two measures of performance are usually reported, the R2 of the association between the predicted and chronological age, and the mean/median absolute deviation (MAD) of estimated age from chronological age, and we argue that only the MAD reflects accuracy. R2 for epigenetic clocks based on the HorvathMammalMethylChip4 was higher and the MAD scaled to age range lower, compared with other DNAm quantification approaches. Scaled MAD tended to be lower among individuals in captive populations, and decreased with an increasing number of CpG sites. We conclude that epigenetic clocks can predict chronological age with relatively high accuracy, suggesting great potential in ecological epigenetics. We discuss general aspects of epigenetic clocks in the hope of stimulating further DNAm‐based research on ageing, and perhaps more importantly, other key traits.

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Keywords

Genetic Markers, Epigenomics, Aging, DNA methylation, ageing, Humans, Animals, non-model, DNA Methylation, epigenetic clock, Epigenesis, Genetic

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
16
Top 10%
Average
Top 10%
Green
hybrid
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