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FEBS Journal
Article . 2026 . Peer-reviewed
License: CC BY
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FEBS Journal
Article . 2026
License: CC BY
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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Characterisation of a phylogenetically distinct PL 25 family ulvan lyase from a seaweed biomass enriched metagenome

Authors: Andrius Jasilionis; Pavithra Sivakumar; Justyna M. Dobruchowska; Sune Fjermedal; Hörður Guðmundsson; Bjorn Thor Adalsteinsson; Guðmundur Ó. Hreggviðsson; +2 Authors

Characterisation of a phylogenetically distinct PL 25 family ulvan lyase from a seaweed biomass enriched metagenome

Abstract

Ulvan is a polysaccharide most abundant in green macroalgae biomass. Investigation of ulvan confirmed the potential of the polysaccharide for food, pharmaceutical and chemistry applications, emphasising the beneficial properties of ulvan oligosaccharides. Efficient production of oligosaccharides requires action of ulvan lyases capable of ensuring polysaccharide enzymatic depolymerisation. The armoury of available ulvan lyases was expanded by characterisation of SH2L_Ulv3 ulvan lyase, which was found to be phylogenetically distinct from previously characterised lyases attributed to PL25 family. A gene encoding a novel ulvan lyase was identified among sequences from a seaweed biomass metagenome enriched in an intertidal coastal hot spring. Identified ulvan lyase was most similar to a hypothetical protein from a Bacteroidales bacterium. Recombinant SH2L_Ulv3 was heterologously (over)produced in Escherichia coli at a high yield, remaining soluble in the expression host as well as after affinity purification. Ulvan lyase active as a 48.6 kDa monomer with evaluated activity optimum pH 7.5 and 200 m m NaCl at 25 °C demonstrated broad substrate specificity. SH2L_Ulv3 degraded ulvan from blade‐thallus as well as tubular‐thallus morphology algae species, efficiently producing three different DP4 and DP2 unsaturated oligosaccharides. The kinetic parameters of SH2L_Ulv3 were K M 3.63 ± 0.12 mg·mL −1 , V max 1.78 ± 0.04 μmol·min −1 ·mL −1 and k cat 1.46 ± 0.04 s −1 . Magnesium ion stimulated SH2L_Ulv3 activity. The characterised enzyme was not thermostable, displaying T m 42 °C. The computationally modelled structure of SH2L_Ulv3 revealed structural organisation and active site architecture as well as ligand substrate binding and zinc ion coordinating residues typical for PL25 lyases; however, with a larger central active site cleft facilitating ulvan polysaccharide degradation.

Countries
Netherlands, Denmark
Keywords

Ulvan oligosaccharides, ulvan enzymatic depolymerisation, Ulvan lyase, ulvan oligosaccharides, Enriched metagenome, PL25 family, Ulvan enzymatic depolymerisation, ulvan lyase, enriched metagenome

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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