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An Optimized System for Multiple Sequence Alignment

descriptionPublicationkeyboard_double_arrow_right Article , Conference object , Other literature type 01 Dec 2009 Turkey Publisher:IEEEJournal:2009 International Conference on Reconfigurable Computing and FPGAs

Authors: Yilmaz, Caglar; Gok, Mustafa;

doi: 10.1109/reconfig.2009.82

handle: 20.500.12605/10937

An Optimized System for Multiple Sequence Alignment

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Abstract

Multiple sequence alignment (MSA) is one of the essential operations for identifying functional and structural relations among proteins. The execution of an MSA algorithm requires high-performance platforms. This paper presents a hardware system that speeds up the popular MSA software ClustalW. The proposed design performs the computation of the most time consuming step of the ClustalW. Test results show that the proposed hardware increases the performance of this step up to 85 times.

Country

Turkey

Related Organizations

Cukurova University
Turkey

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