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A Study on Studies: Exploring the Metadata Associated with dbGaP Studies

Authors: Karen Truong; Mike Conway;

A Study on Studies: Exploring the Metadata Associated with dbGaP Studies

Abstract

The database of Genotypes and Phenotypes (dbGaP) was developed by the National Heart Lung, and Blood Institute (NHLBI) to archive genome-wide association studies (GWAS) data. As of July 17th 2012, dbGaP contained 305 top-level studies. The metadata for each study (available from the dbGaP website) are organized into distinct sections, including a study description, inclusion/exclusion criteria, policies for authorized access requests, MeSH terms, PubMed identifiers, study histories, and the names of principal and co-investigators. We here tabulate the salient characteristics of dbGaP metadata as part of the Phenotype Discoverer (PhD) project, a research project at the University of California San Diego Division of Biomedical Informatics which aims to enhance the """"searchability"""" of the current dbGaP website through the alignment of phenotypes to a standard information model. In particular, we are interested in using the extracted metadata PubMed identifiers, principal investigator names, associated journal names, etc. as input to a statistical text

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
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