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Demographics Identification: Variable Extraction Resource (DIVER)

Authors: Alexander Hsieh; Son Doan; Michael Conway; Ko-Wei Lin; Hyeoneui Kim;

Demographics Identification: Variable Extraction Resource (DIVER)

Abstract

Lack of standardization in representing phenotype data generated in different studies is a major barrier to data reuse for cross study analyses. To address this issue, we developed DIVER, a tool that identifies and standardizes demographic variables in dbGaP, based on simple natural language processing and standardized terminology mapping. In its evaluation using variables (N=3,565) from a range of pulmonary studies in dbGaP, DIVER proved to be an effective approach to standardizing dbGaP variables by successfully identifying demographic variables with high rates of recall and precision (98% and 94%, respectively). In addition, DIVER correctly modeled 79% of the identified demographic variables at the core semantic level. Examination of variables that DIVER could not handle shed light on where our tool needs enhancement so it can further improve its semantic modeling accuracy. DIVER is an important component of a system for phenotype discovery in dbGaP studies

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Average
Top 10%
Average
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