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Acta Crystallographica Section F Structural Biology and Crystallization Communications
Article . 2012 . Peer-reviewed
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ATP-dependent DNA ligase fromThermococcussp. 1519 displays a new arrangement of the OB-fold domain

Authors: Konstantin M. Polyakov; Tatiana Petrova; Ekaterina Yu. Bezsudnova; K.M. Boyko; Ivan G. Shabalin; Andrey V. Mardanov; M. Kozin; +6 Authors

ATP-dependent DNA ligase fromThermococcussp. 1519 displays a new arrangement of the OB-fold domain

Abstract

DNA ligases join single-strand breaks in double-stranded DNA by catalyzing the formation of a phosphodiester bond between adjacent 5'-phosphate and 3'-hydroxyl termini. Their function is essential for maintaining genome integrity in the replication, recombination and repair of DNA. High flexibility is important for the function of DNA ligase molecules. Two types of overall conformations of archaeal DNA ligase that depend on the relative position of the OB-fold domain have previously been revealed: closed and open extended conformations. The structure of ATP-dependent DNA ligase from Thermococcus sp. 1519 (LigTh1519) in the crystalline state determined at a resolution of 3.02 Å shows a new relative arrangement of the OB-fold domain which is intermediate between the positions of this domain in the closed and the open extended conformations of previously determined archaeal DNA ligases. However, small-angle X-ray scattering (SAXS) measurements indicate that in solution the LigTh1519 molecule adopts either an open extended conformation or both an intermediate and an open extended conformation with the open extended conformation being dominant.

Keywords

Models, Molecular, Protein Folding, Binding Sites, DNA Ligases, Archaeal Proteins, Crystallography, X-Ray, Thermococcus, DNA Ligase ATP, Adenosine Triphosphate, DNA, Archaeal, Scattering, Small Angle, DNA Breaks, Single-Stranded

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
16
Average
Average
Top 10%
bronze