Xylulose 1,5-bisphosphate (XuBP) is synthesized from ribulose 1,5-bisphosphate (RuBP) at carbamylated catalytic sites on ribulose 1,5-bisphosphate carboxylase (Rubisco) with significant amounts of XuBP being formed at pH less than 8.0. XuBP has been separated by high performance liquid chromatography and identified by pulsed amperometry from compounds bound to Rubisco during catalysis with the purified enzyme and from celery (Apium graveolens var Utah) leaf extracts. XuBP does not bind tightly to carbamylated sites, but does bind tightly to decarbamylated sites. Upon incubation of fully activated Rubisco with 5 micromolar XuBP, loss of activator CO(2) occurred before XuBP bound to the enzyme catalytic sites, even in the presence of excess CO(2) and Mg(2+). Binding of XuBP to decarbamylated Rubisco sites was highly pH dependent. At pH 7.0 and 7.5 with 10 millimolar MgCl(2) and 10 millimolar KHCO(3), the apparent dissociation constant for XuBP, K(d), was 0.03 micromolar, whereas at pH 8.0 and 8.5, the apparent K(d) was 0.35 and 2.0 micromolar, respectively. This increase in K(d) with pH was a result of a decrease in the association rate constant and an increase in the dissociation rate constant of XuBP bound to decarbamylated sites on Rubisco. The K(d) of 2-carboxyarabinitol 1-phosphate binding to carbamylated sites was only slightly pH dependent.