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Steric Constraints in Model Proteins

descriptionPublicationkeyboard_double_arrow_right Article , Preprint 22 Jun 1998Embargo end date: 01 Jan 1997 Italy English Publisher:American Physical Society (APS)Journal:Physical Review Letters, volume 80, pages 5,683-5,686 (issn: 0031-9007, eissn: 1079-7114, Copyright policy )
Authors: MICHELETTI C.; BANAVAR JR; MARITAN, AMOS; SENO, FLAVIO;

doi: 10.1103/physrevlett.80.5683 , 10.48550/arxiv.cond-mat/9712277

arXiv: cond-mat/9712277

handle: 11577/123818 , 20.500.11767/13832

Steric Constraints in Model Proteins

Abstract

A simple lattice model for proteins that allows for distinct sizes of the amino acids is presented. The model is found to lead to a significant number of conformations that are the unique ground state of one or more sequences or encodable. Furthermore, several of the encodable structures are highly designable and are the non-degenerate ground state of several sequences. Even though the native state conformations are typically compact, not all compact conformations are encodable. The incorporation of the hydrophobic and polar nature of amino acids further enhances the attractive features of the model.

RevTex, 5 pages, 3 postscript figures

Country
Italy
Related Organizations
Keywords

Quantitative Biology - Biomolecules, Statistical Mechanics (cond-mat.stat-mech), FOS: Biological sciences, Soft Condensed Matter (cond-mat.soft), FOS: Physical sciences, Biomolecules (q-bio.BM), Condensed Matter - Soft Condensed Matter, Condensed Matter - Statistical Mechanics

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    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 22
    popularity
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
22
Average
Top 10%
Top 10%
Green
bronze