In this Letter we discuss a natural general relativistic mechanism that causes inhomogeneities and hence generates matter perturbations in the early universe. We concentrate on spikes, both incomplete spikes and recurring spikes, that naturally occur in the initial oscillatory regime of general cosmological models. In particular, we explicitly show that spikes occurring in a class of G_2 models lead to inhomogeneities that, due to gravitational instability, leave small residual imprints on matter in the form of matter perturbations. The residual matter overdensities from recurring spikes are not local but form on surfaces. We discuss the potential physical consequences of the residual matter imprints and their possible effect on the subsequent formation of large scale structure.

This is the longer version of the article that appeared in Phys. Rev. Lett. 108, 191101 (2012)