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arXiv.org e-Print Archive
Preprint . 2001
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Codon distributions in DNA

descriptionPublicationkeyboard_double_arrow_right Article , Preprint 18 Apr 2001Embargo end date: 01 Jan 2001 English Publisher:American Physical Society (APS)Journal:Physical Review E, volume 63 (issn: 1063-651X, eissn: 1095-3787, Copyright policy )
Authors: Som, A.; Chattopadhyay, S.; Chakrabarti, J.; Bandyopadhyay, D.;

doi: 10.1103/physreve.63.051908 , 10.48550/arxiv.physics/0102021

pmid: 11414934

arXiv: physics/0102021

Codon distributions in DNA

Abstract

The codons, sixtyfour in number, are distributed over the coding parts of DNA sequences. The distribution function is the plot of frequency-versus-rank of the codons. These distributions are characterised by parameters that are almost universal, i.e., gene independent. There is but a small part that depends on the gene. We present the theory to calculate the universal (gene-independent) part. The part that is gene-specific, however, has undetermined overlaps and fluctuations.

31 pages, 5 figures

Related Organizations
Keywords

Models, Statistical, Models, Genetic, FOS: Physical sciences, DNA, Models, Theoretical, Biological Evolution, Introns, Quantitative Biology, Evolution, Molecular, Biological Physics (physics.bio-ph), Physics - Data Analysis, Statistics and Probability, FOS: Biological sciences, Animals, Humans, Physics - Biological Physics, Codon, Base Pairing, Data Analysis, Statistics and Probability (physics.data-an), Quantitative Biology (q-bio)

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 18
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    		 Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    		 Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    		 Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
18
Average
Top 10%
Top 10%
Green