Calabi-Yau compactifications of the E 8 × E 8 heterotic string provide a promising route to recovering the four-dimensional particle physics described by the Standard Model. While the topology of the Calabi-Yau space determines the overall matter content in the low-energy effective field theory, further details of the compactification geometry are needed to calculate the normalized physical couplings and masses of elementary particles. In this work, we present numerical computations of physical Yukawa couplings in a number of heterotic models in the standard embedding and demonstrate the existence of natural hierarchies, a coveted feature in string model building.