
We report a new fluorogenic method for sealed-tube PCR analysis using a quencher-labeled peptide nucleic acid (Q-PNA) probe. The Q-PNA hybridizes to a complementary tag sequence located at the 5′ end of a 5′ fluorophore-labeled oligonucleotide primer, quenching the primer's fluorescence. Incorporation of the primer into a doublestranded amplicon causes displacement of the Q-PNA such that the fluorescence of the sample is a direct indication of the amplicon concentration. The Q-PNA is able to quench multiple primers bearing distinct 5′ fluorophores in a single reaction. We show realtime quantitative detection of a single-copy gene, K-ras, from human genomic DNA, as well as an endpoint multiplex assay for Chlamydia trachomatis and Neisseria gonorrhoeae targets. Because the Q-PNA may be used to quench any primer that contains the 5′ tag sequence, it is possible to inexpensively adapt an existing primer set for use in a self-reporting fluorescent assay by including the tag sequence in one of the primers.
DNA, Bacterial, Peptide Nucleic Acids, Endpoint Determination, Gene Amplification, Chlamydia trachomatis, Polymerase Chain Reaction, Neisseria gonorrhoeae, Genes, ras, Spectrometry, Fluorescence, Genes, Bacterial, Humans, DNA Primers, Fluorescent Dyes
DNA, Bacterial, Peptide Nucleic Acids, Endpoint Determination, Gene Amplification, Chlamydia trachomatis, Polymerase Chain Reaction, Neisseria gonorrhoeae, Genes, ras, Spectrometry, Fluorescence, Genes, Bacterial, Humans, DNA Primers, Fluorescent Dyes
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