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https://www.biorxiv.org/conten...
Article
License: CC BY NC
Data sources: UnpayWall
https://doi.org/10.1101/654152...
Article . 2019 . Peer-reviewed
Data sources: Crossref
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OPTIMOS PRIME: An R package for autoecological (optima and tolerance range) data calculation

Authors: Sathicq, Maria Belen; Nicolosi Gelis, Maria Mercedes; Cochero, Joaquin;

OPTIMOS PRIME: An R package for autoecological (optima and tolerance range) data calculation

Abstract

ABSTRACT Calculation of autoecological data, such as optima and tolerance ranges to environmental variables, can be useful to establish the distribution and abundance of the species. These calculations, although mathematically not complex, can be prone to error when using a large database. We present an R package (“optimos.prime”) that uses species’ abundance data and environmental data to calculate the optimum value and tolerance range of each species to each environmental factor, by weighted average. Additionally, the package can create caterpillar plots to show the results. Using sample data from a phytoplankton database, we exemplify the use of the R package and its functions. A stand-alone version for Windows is also provided, and source code and documents are freely available on GitHub to encourage collaborative work.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
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